Publications
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2023 2023
Aubreville M. , Stathonikos N. , Bertram CA. , Klopfleisch R. , ter Hoeve N. , Ciompi F. , Wilm F. , Marzahl C. , Donovan TA. , Maier A. , Breen J. , Ravikumar N. , Chung Y. , Park J. , Nateghi R. , Pourakpour F. , Fick RH. , Ben Hadj S. , Jahanifar M. , Shephard A. , Dexl J. , Wittenberg T. , Kondo S. , Lafarge MW. , Koelzer VH. , Liang J. , Wang Y. , Long X. , Liu J. , Razavi S. , Khademi A. , Yang S. , Wang X. , Erber R. , Klang A. , Lipnik K. , Bolfa P. , Dark MJ. , Wasinger G. , Veta M. , Breininger K. :Mitosis domain generalization in histopathology images — The MIDOG challenge Medical Image Analysis 84 2023 ), Article No.: 102699 ISSN: 1361-8415 10.1016/j.media.2022.102699 Boria N. , Kiederle J. , Yger F. , Blumenthal DB. :The edge-preservation similarity for comparing rooted, unordered, node-labeled trees Pattern Recognition Letters 167 2023 ), p. 189-195 ISSN: 0167-8655 10.1016/j.patrec.2023.02.017 Day TG. , Kainz B. , Razavi R. , Simpson J. :RE: Wang et al. Diagnosis of fetal total anomalous pulmonary venous connection based on the post-left atrium space ratio using artificial intelligence Prenatal Diagnosis 2023 )ISSN: 0197-3851 10.1002/pd.6287 Del Vecchio A. :Neuromechanics of the Rate of Force Development Exercise and Sport Sciences Reviews 51 2023 ), p. 34-42 ISSN: 0091-6331 10.1249/JES.0000000000000306 Delgado-Ortiz L. , Polhemus A. , Keogh A. , Sutton N. , Remmele W. , Hansen C. , Kluge F. , Sharrack B. , Becker C. , Troosters T. , Maetzler W. , Rochester L. , Frei A. , Puhan MA. , Garcia-Aymerich J. :Listening to the patients' voice: a conceptual framework of the walking experience Age and Ageing 52 2023 )ISSN: 0002-0729 10.1093/ageing/afac233 Dideriksen J. , Del Vecchio A. :Adaptations in motor unit properties underlying changes in recruitment, rate coding, and maximum force Journal of Neurophysiology 129 2023 ), p. 235-246 ISSN: 0022-3077 10.1152/jn.00222.2022 Dorschky E. , Camomilla V. , Davis J. , Federolf P. , Reenalda J. , Koelewijn A. :Perspective on “in the wild” movement analysis using machine learning Human movement science 87 2023 ), Article No.: 103042 ISSN: 1872-7646 10.1016/j.humov.2022.103042 Kruse E. , Döllinger M. , Schützenberger A. , Kist A. :GlottisNetV2: Temporal Glottal Midline Detection using Deep Convolutional Neural Networks IEEE Journal of Translational Engineering in Health and Medicine 2023 ), p. 1-1 ISSN: 2168-2372 10.1109/JTEHM.2023.3237859 Laidig D. , Seel T. :VQF: Highly accurate IMU orientation estimation with bias estimation and magnetic disturbance rejection Information Fusion 91 2023 ), p. 187-204 ISSN: 1566-2535 10.1016/j.inffus.2022.10.014 Larsen D. , Ikuma T. , Neubig L. , Kist A. , Leonard R. , McWhorter AJ. , Kunduk M. :Pixel-Based Swallow Measurements: Correcting Nonsquare Pixels Journal of Speech Language and Hearing Research 66 2023 ), p. 565-572 ISSN: 1092-4388 10.1044/2022_JSLHR-22-00306 Nitschke M. , Marzilger R. , Leyendecker S. , Eskofier B. , Koelewijn A. :Change the direction: 3D optimal control simulation by directly tracking marker and ground reaction force data PeerJ 2023 )ISSN: 2167-8359 10.7717/peerj.14852 https://peerj.com/articles/14852/ Oppelt MP. , Foltyn A. , Deuschel J. , Lang NR. , Holzer N. , Eskofier B. , Yang SH. :ADABase: A Multimodal Dataset for Cognitive Load Estimation Sensors 23 2023 )ISSN: 1424-8220 10.3390/s23010340 Palmerini L. , Reggi L. , Bonci T. , Del Din S. , Micó-Amigo ME. , Salis F. , Bertuletti S. , Caruso M. , Cereatti A. , Gazit E. , Paraschiv-Ionescu A. , Soltani A. , Kluge F. , Küderle A. , Ullrich M. , Kirk C. , Hiden H. , D’Ascanio I. , Hansen C. , Rochester L. , Mazzà C. , Chiari L. :Mobility recorded by wearable devices and gold standards: the Mobilise-D procedure for data standardization Scientific Data 10 2023 ), Article No.: 38 ISSN: 2052-4463 10.1038/s41597-023-01930-9 Pan Z. , Breininger K. , Aubreville M. , Stelzle F. , Maier A. , Oetter N. , Mantsopoulos K. , Iro H. , Goncalves M. , Sievert M. :Defining a baseline identification of artifacts in confocal laser endomicroscopy in head and neck cancer imaging American Journal of Otolaryngology 44 2023 ), Article No.: 103779 ISSN: 0196-0709 10.1016/j.amjoto.2022.103779 Richer R. , Abel L. , Küderle A. , Eskofier B. , Rohleder N. :CARWatch – A smartphone application for improving the accuracy of cortisol awakening response sampling Psychoneuroendocrinology 151 2023 ), p. 106073 ISSN: 0306-4530 10.1016/j.psyneuen.2023.106073 https://www.sciencedirect.com/science/article/abs/pii/S0306453023000513 Vornehm M. , Spiske U. , Fenski M. , Wetzl J. , Preuhs E. , Maier A. , Schulz-Menger J. , Giese D. :Fully Automatic Scar Segmentation on LGE Images with Reduced Contrast Agent Dose SCMR 26th Annual Scientific Sessions (San Diego, CA 25. January 2023 - 28. January 2023 )In: Proceedings of the SCMR 26th Annual Scientific Sessions 2023 Vornehm M. , Wetzl J. , Giese D. , Knoll F. :k-t Adaptive Regularization in Variational Networks for Cardiac Cine Reconstruction ISMRM Workshop on Data Sampling & Image Reconstruction (Sedona, AZ 8. January 2023 - 11. January 2023 )In: Proceedings of the ISMRM Workshop on Data Sampling & Image Reconstruction 2023 Wels M. , Breininger K. , Taubmann O. , Mühlberg A. , Allmendinger T. , Gülsün MA. , Schöbinger M. , André F. , Buss SJ. , Görich J. , Sühling M. , Maier A. , Denzinger F. :How scan parameter choice affects deep learning-based coronary artery disease assessment from computed tomography Scientific Reports 13 2023 ), p. 2563- ISSN: 2045-2322 10.1038/s41598-023-29347-9 Zimmer VA. , Gomez A. , Skelton E. , Wright R. , Wheeler G. , Deng S. , Ghavami N. , Lloyd K. , Matthew J. , Kainz B. , Rueckert D. , Hajnal JV. , Schnabel JA. :Placenta segmentation in ultrasound imaging: Addressing sources of uncertainty and limited field-of-view Medical Image Analysis 83 2023 ), Article No.: 102639 ISSN: 1361-8415 10.1016/j.media.2022.102639 Zürl M. , Dirauf R. , Köferl F. , Steinlein N. , Sueskind J. , Zanca D. , Brehm I. , von Fersen L. , Eskofier B. :PolarBearVidID: A Video-Based Re-Identification Benchmark Dataset for Polar Bears Animals 13 2023 ), p. 801 ISSN: 2076-2615 10.3390/ani13050801 da Rosa Tavares JE. , Ullrich M. , Roth N. , Kluge F. , Eskofier B. , Gaßner H. , Klucken J. , Gladow T. , Marxreiter F. , da Costa CA. , da Rosa Righi R. , Victória Barbosa JL. :uTUG: An unsupervised Timed Up and Go test for Parkinson's disease Biomedical Signal Processing and Control 81 2023 ), Article No.: 104394 ISSN: 1746-8094 10.1016/j.bspc.2022.104394
2022 2022
Adamowicz K. , Maier A. , Baumbach J. , Blumenthal DB. :Online in silico validation of disease and gene sets, clusterings or subnetworks with DIGEST Briefings in Bioinformatics 2022 )ISSN: 1467-5463 10.1093/bib/bbac247 https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbac247/6618231?guestAccessKey=e1b9455f-ac28-4d46-af6d-c51b3b98cc8d Al-Timemy AH. , Castellini C. , Escudero J. , Khushaba R. , Muceli S. :Editorial: Current Trends in Deep Learning for Movement Analysis and Prosthesis Control Frontiers in Neuroscience 16 2022 ), Article No.: 889202 ISSN: 1662-4548 10.3389/fnins.2022.889202 Albrecht BM. , Flasskamp FT. , Koster A. , Eskofier B. , Bammann K. :Cross-sectional survey on researchers' experience in using accelerometers in health-related studies BMJ Open Sport and Exercise Medicine 8 2022 )ISSN: 2055-7647 10.1136/bmjsem-2021-001286 Alix-Fages C. , Del Vecchio A. , Baz-Valle E. , Santos-Concejero J. , Balsalobre-Fernandez C. :The role of the neural stimulus in regulating skeletal muscle hypertrophy European Journal of Applied Physiology 2022 )ISSN: 1439-6319 10.1007/s00421-022-04906-6 Antunes RS. , Da Costa CA. , Küderle A. , Abdullahi I. , Eskofier B. :Federated Learning for Healthcare: Systematic Review and Architecture Proposal ACM Transactions on Intelligent Systems and Technology 2022 )ISSN: 2157-6904 10.1145/3501813 https://dl.acm.org/doi/10.1145/3501813 Arbogast N. , Kordon FJ. , Kunze H. , Swartman B. , El Barbari JS. , Breininger K. :Towards Weakly Supervised Segmentation of Orthopaedic X-ray Images Using Constrained-CNN Losses Bildverarbeitung für die Medizin 2022 (Heidelberg 26. June 2022 - 28. June 2022 )In: Maier-Hein K, Deserno TM, Handels H, Maier A, Palm C, Tolxdorff T (ed.): Bildverarbeitung für die Medizin 2022 , Wiesbaden 2022 10.1007/978-3-658-36932-3_30 Bachhuber S. , Weber D. , Weygers I. , Seel T. :RNN-based Observability Analysis for Magnetometer-Free Sparse Inertial Motion Tracking 25th International Conference on Information Fusion, FUSION 2022 (Linkoping 4. July 2022 - 7. July 2022 )In: 2022 25th International Conference on Information Fusion, FUSION 2022 2022 10.23919/FUSION49751.2022.9841375 Baugh M. , Tan J. , Vlontzos A. , Müller J. , Kainz B. :nnOOD: A Framework for Benchmarking Self-supervised Anomaly Localisation Methods 4th Workshop on Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, UNSURE 2022, held in conjunction with 25th International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2022 (Singapore, SGP 18. September 2022 - 18. September 2022 )In: Carole H. Sudre, Carole H. Sudre, Christian F. Baumgartner, Adrian Dalca, Adrian Dalca, William M. Wells III, Chen Qin, Ryutaro Tanno, Koen Van Leemput, Koen Van Leemput, William M. Wells III (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022 10.1007/978-3-031-16749-2_10 Beckerle P. , Castellini C. , Lenggenhager B. , Dosen S. :Editorial: Embodiment and Co-adaptation Through Human-Machine Interfaces: At the Border of Robotics, Neuroscience and Psychology Frontiers in Neurorobotics 16 2022 ), Article No.: 871785 ISSN: 1662-5218 10.3389/fnbot.2022.871785 Bernett J. , Krupke D. , Sadegh S. , Baumbach J. , Fekete SP. , Kacprowski T. , List M. , Blumenthal DB. :Robust disease module mining via enumeration of diverse prize-collecting Steiner trees Bioinformatics 38 2022 ), p. 1600-1606 ISSN: 1367-4803 10.1093/bioinformatics/btab876 https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btab876/6497106?guestAccessKey=27c2a19b-11b5-4c3c-88d5-f1131e3809a9 Bertram CA. , Aubreville M. , Donovan TA. , Bartel A. , Marzahl C. , Assenmacher CA. , Becker K. , Bennett M. , Corner S. , Cossic B. , Denk D. , Dettwiler M. , Gonzalez BG. , Gurtner C. , Haverkamp AK. , Heier A. , Lehmbecker A. , Merz S. , Noland EL. , Plog S. , Schmidt A. , Sebastian F. , Sledge DG. , Smedley RC. , Tecilla M. , Thaiwong T. , Fuchs-Baumgartinger A. , Meuten DJ. , Breininger K. , Kiupel M. , Maier A. , Klopfleisch R. , Wilm F. :Computer-assisted mitotic count using a deep learning–based algorithm improves interobserver reproducibility and accuracy Veterinary Pathology 59 2022 ), p. 211-226 ISSN: 0300-9858 10.1177/03009858211067478 Bertram CA. , Aubreville M. , Donovan TA. , Bartel A. , Wilm F. , Marzahl C. , Assenmacher CA. , Becker K. , Bennett M. , Corner S. , Cossic B. , Denk D. , Dettwiler M. , Gonzalez BG. , Gurtner C. , Haverkamp AK. , Heier A. , Lehmbecker A. , Merz S. , Noland EL. , Plog S. , Schmidt A. , Sebastian F. , Sledge DG. , Smedley RC. , Tecilla M. , Thaiwong T. , Fuchs-Baumgartinger A. , Meuten DJ. , Breininger K. , Kiupel M. , Maier A. , Klopfleisch R. :Computer Assistance: A New Gold Standard for the Mitotic Count? Journal of Comparative Pathology 191 2022 )ISSN: 0021-9975 Bertram CA. , Marzahl C. , Bartel A. , Stayt J. , Bonsembiante F. , Beeler-Marfisi J. , Barton AK. , Brocca G. , Gelain ME. , Glasel A. , Du Preez K. , Weiler K. , Weissenbacher-Lang C. , Breininger K. , Aubreville M. , Maier A. , Klopfleisch R. , Hill J. :Cytologic scoring of equine exercise-induced pulmonary hemorrhage: Performance of human experts and a deep learning-based algorithm Veterinary Pathology 2022 )ISSN: 0300-9858 10.1177/03009858221137582 Blumenthal DB. , Bougleux S. , Dignoes A. , Gamper J. :Enumerating dissimilar minimum cost perfect and error-correcting bipartite matchings for robust data matching Information Sciences 596 2022 ), p. 202-221 ISSN: 0020-0255 10.1016/j.ins.2022.03.017 Breininger K. , Schaffert R. , Abu-Qamar O. , Fujimoto JG. , Maier A. , Husvogt L. , Fu W. :Form Follows Function: Smart Network Design Enables Zero-shot Network Reuse German Workshop on Medical Image Computing, 2022 (Heidelberg, DEU 26. June 2022 - 28. June 2022 )In: Klaus Maier-Hein, Thomas M. Deserno, Heinz Handels, Andreas Maier, Christoph Palm, Thomas Tolxdorff (ed.): Informatik aktuell 2022 10.1007/978-3-658-36932-3_26 Bräcklein M. , Barsakcioglu DY. , Del Vecchio A. , Ibáñez J. , Farina D. :Reading and Modulating Cortical β Bursts from Motor Unit Spiking Activity The Journal of Neuroscience 42 2022 ), p. 3611-3621 ISSN: 1529-2401 10.1523/JNEUROSCI.1885-21.2022 Cakici AL. , Oßwald M. , Souza de Oliveira D. , Braun D. , Simpetru RC. , Kinfe TM. , Eskofier B. , Del Vecchio A. :A Generalized Framework for the Study of Spinal Motor Neurons Controlling the Human Hand During Dynamic Movements 44th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2022 (Glasgow, GBR 11. July 2022 - 15. July 2022 )In: Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2022 10.1109/EMBC48229.2022.9870914 Castellini C. :Peripheral Nervous System Interfaces: Invasive or Non-invasive? Frontiers in Neurorobotics 16 2022 )ISSN: 1662-5218 10.3389/fnbot.2022.846866 Ceron JD. , Lopez DM. , Eskofier B. , Kluge F. :Framework for Simultaneous Indoor Localization, Mapping, and Human Activity Recognition in Ambient Assisted Living Scenarios Sensors 22 2022 )ISSN: 1424-8220 10.3390/s22093364 Del Vecchio A. , Casolo A. , Dideriksen JL. , Aagaard P. , Felici F. , Falla D. , Farina D. :Lack of increased rate of force development after strength training is explained by specific neural, not muscular, motor unit adaptations Journal of Applied Physiology 132 2022 ), p. 84-94 ISSN: 8750-7587 10.1152/japplphysiol.00218.2021 Del Vecchio A. , Jones RH. , Schofield IS. , Kinfe TM. , Ibáñez J. , Farina D. , Baker SN. :Interfacing Motor Units in Nonhuman Primates Identifies a Principal Neural Component for Force Control Constrained by the Size Principle The Journal of Neuroscience 42 2022 ), p. 7386-7399 ISSN: 1529-2401 10.1523/JNEUROSCI.0649-22.2022 Delgado Ortiz L. , Polhemus A. , Keogh A. , Sutton N. , Remmele W. , Hansen C. , Kluge F. , Sharrack B. , Becker C. , Troosters T. , Maetzler W. , Rochester L. , Frei A. , Puhan M. , Garcia-Aymerich J. :What is walking? a systematic review and meta-ethnography In: EUROPEAN RESPIRATORY JOURNAL , SHEFFIELD 2022 10.1183/13993003.congress-2022.377 Demir K. , May M. , Schmid A. , Uder M. , Breininger K. , Weise T. , Maier A. , Yang SH. :PoCaP Corpus: A Multimodal Dataset for Smart Operating Room Speech Assistant Using Interventional Radiology Workflow Analysis 25th International Conference on Text, Speech, and Dialogue, TSD 2022 (Brno 6. September 2022 - 9. September 2022 )In: Petr Sojka, Aleš Horák, Ivan Kopeček, Karel Pala (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022 10.1007/978-3-031-16270-1_38 Denzinger F. , Wels M. , Taubmann O. , Gülsün MA. , Schöbinger M. , Andre F. , Buss SJ. , Goerich J. , Sühling M. , Maier A. , Breininger K. :CAD-RADS Scoring using Deep Learning and Task-Specific Centerline Labeling Medical Imaging with Deep Learning (Zürich 6. July 2022 - 8. July 2022 )https://openreview.net/pdf?id=vVPMifME8b Denzinger F. , Wels M. , Taubmann O. , Gülsün MA. , Schöbinger M. , Andre F. , Buss SJ. , Goerich J. , Sühling M. , Maier A. , Breininger K. :CAD-RADS Scoring using Deep Learning and Task-Specific Centerline Labeling International Conference on Medical Imaging with Deep Learning (Zürich 6. July 2022 - 8. July 2022 )In: PMLR (ed.): PMLR 2022 https://proceedings.mlr.press/v172/denzinger22a.html Dib W. , Ghanem K. , Ababou A. , Eskofier B. :Human Activity Recognition based on the Fading characteristics of the On-body Channel IEEE Sensors Journal 2022 )ISSN: 1530-437X 10.1109/JSEN.2022.3159992 Ede S. , Baghdadlian S. , Weber L. , Nguyen A. , Zanca D. , Samek W. , Lapuschkin S. :Explain to Not Forget: Defending Against Catastrophic Forgetting with XAI 6th IFIP TC 5, TC 12, WG 8.4, WG 8.9, WG 12.9 International Cross-Domain Conference for Machine Learning and Knowledge Extraction, CD-MAKE 2022, held in conjunction with the 17th International Conference on Availability, Reliability and Security, ARES 2022 (Vienna 23. August 2022 - 26. August 2022 )In: Andreas Holzinger, Andreas Holzinger, Andreas Holzinger, Peter Kieseberg, A Min Tjoa, Edgar Weippl, Edgar Weippl (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022 10.1007/978-3-031-14463-9_1 Egle F. , Kluge F. , Schöne D. , Becker L. , Koelewijn A. :Development of an Inertial Sensor-Based Exergame for Combined Cognitive and Physical Training 2022 IEEE-EMBS International Conference on Wearable and Implantable Body Sensor Networks (BSN) (Ioannina 27. September 2022 - 30. September 2022 )In: IEEE (ed.): 2022 IEEE-EMBS International Conference on Wearable and Implantable Body Sensor Networks (BSN) 2022 10.1109/BSN56160.2022.9928474 Etard O. , Messaoud RB. , Gaugain G. , Reichenbach T. :No Evidence of Attentional Modulation of the Neural Response to the Temporal Fine Structure of Continuous Musical Pieces Journal of Cognitive Neuroscience 34 2022 ), p. 411-424 ISSN: 0898-929X 10.1162/jocn_a_01811 Facco Rodrigues V. , Righi RR. , Andre da Costa C. , Stoffel Antunes R. , Bazo R. , Reis ES. , Seewald LA. , S. LG. , Eskofier B. :HealthStack: Providing an IoT Middleware for Malleable QoS Service Stacking for Hospital 4.0 Operating Rooms IEEE Internet of Things 2022 )ISSN: 2327-4662 10.1109/JIOT.2022.3160633 Fidorra J. , Nissen M. , Abdullahi Yari I. , Ostgathe C. , Steigleder T. , Eskofier B. :Concept of a Simple Reaction Test for eHealth-Based Opioid Response Assessment in Palliative Care 12th World Research Congress of the European Association for Palliative Care (Online 18. May 2022 - 20. May 2022 )10.1177/02692163221093145 https://journals.sagepub.com/doi/10.1177/02692163221093145 Flaucher M. , Nissen M. , Jäger K. , Titzmann A. , Pontones C. , Hübner H. , Fasching P. , Beckmann M. , Gradl S. , Eskofier B. :Smartphone-Based Colorimetric Analysis of Urine Test Strips for At-Home Prenatal Care IEEE Journal of Translational Engineering in Health and Medicine 2022 ), p. 1-9 ISSN: 2168-2372 10.1109/JTEHM.2022.3179147 Fleischmann S. , Nitschke M. , Marzilger R. , Koelewijn A. :Can we combine data sets? Feature extraction and clustering motion capture data 17th International Symposium of 3-D Analysis of Human Movement (3D-AHM) (Tokyo, Japan 16. July 2022 - 19. July 2022 )Folle L. , Bayat S. , Kleyer A. , Fagni F. , Kapsner L. , Schlereth M. , Meinderink T. , Breininger K. , Tascilar K. , Krönke G. , Uder M. , Sticherling M. , Bickelhaupt S. , Maier A. , Roemer F. , Simon D. , Schett G. :CLASSIFICATION OF PSORIATIC ARTHRITIS, SERONEGATIVE RHEUMATOID ARTHRITIS, AND SEROPOSITIVE RHEUMATOID ARTHRITIS USING DEEP LEARNING ON MAGNETIC RESONANCE IMAGING EULAR Congress (Kopenhagen 1. June 2022 - 4. June 2022 )In: Prof Josef Smolen (ed.): Supplement 1 2022 10.1136/annrheumdis-2022-eular.966 https://ard.bmj.com/content/81/Suppl_1/194.2 Folle L. , Bayat S. , Kleyer A. , Fagni F. , Kapsner L. , Schlereth M. , Meinderink T. , Breininger K. , Tascilar K. , Krönke G. , Uder M. , Sticherling M. , Bickelhaupt S. , Schett G. , Maier A. , Roemer F. , Simon D. :Advanced neural networks for classification of MRI in psoriatic arthritis, seronegative, and seropositive rheumatoid arthritis Rheumatology 2022 )ISSN: 1462-0324 10.1093/rheumatology/keac197 Folle L. , Bayat S. , Kleyer A. , Fagni F. , Kapsner L. , Schlereth M. , Meinderink T. , Breininger K. , Tascilar K. , Krönke G. , Uder M. , Sticherling M. , Bickelhaupt S. , Schett G. , Maier A. , Roemer F. , Simon D. :Neural Networks for Distinguishing Rheumatoid Arthritis from Psoriatic Arthritis by Using Magnetic Resonance Imaging ACR Convergence 2022 (Philadelphia, PA 10. November 2022 - 14. November 2022 )In: Arthritis Rheumatol. 2022 https://acrabstracts.org/abstract/neural-networks-for-distinguishing-rheumatoid-arthritis-from-psoriatic-arthritis-by-using-magnetic-resonance-imaging/ https://acrabstracts.org/abstract/neural-networks-for-distinguishing-rheumatoid-arthritis-from-psoriatic-arthritis-by-using-magnetic-resonance-imaging/ Froehlich H. , Bontridder N. , Petrovska-Delacreta D. , Glaab E. , Kluge F. , El Yacoubi M. , Marin Valero M. , Corvol JC. , Eskofier B. , Van Gyseghem JM. , Lehericy S. , Winkler J. , Klucken J. :Leveraging the Potential of Digital Technology for Better Individualized Treatment of Parkinson's Disease Frontiers in Neurology 13 2022 )ISSN: 1664-2295 10.3389/fneur.2022.788427 Gambietz M. , Nitschke M. , Miehling J. , Koelewijn A. :What should a metabolic energy model look like? Sensitivity of metabolic energy model parameters during gait 9th World Congress of Biomechanics 2022 Taipei (Taipei 10. July 2022 - 14. July 2022 )Gigli A. , Gijsberts A. , Castellini C. :Unsupervised Myocontrol of a Virtual Hand Based on a Coadaptive Abstract Motor Mapping 2022 International Conference on Rehabilitation Robotics, ICORR 2022 (Rotterdam 25. July 2022 - 29. July 2022 )In: IEEE International Conference on Rehabilitation Robotics 2022 10.1109/ICORR55369.2022.9896414 Gmelch LM. , Böhme S. , Capito K. , Rupp L. , Richer R. , Sadeghi M. , Eskofier B. , Berking M. :EmpkinS - Empathokinästhetische Sensorik für Biofeedback bei Depression Deutscher Psychotherapiekongress (DPK) (Berlin 7. June 2022 - 11. June 2022 )https://deutscher-psychotherapie-kongress.de/wp-content/uploads/2022/06/web_Programm_DPK2022_SS_09062022_final.pdf Groh R. , Dürr S. , Schützenberger A. , Semmler M. , Kist A. :Long-term performance assessment of fully automatic biomedical glottis segmentation at the point of care PLoS ONE 17 2022 ), p. e0266989- ISSN: 1932-6203 10.1371/journal.pone.0266989 Groh R. , Lei Z. , Martignetti L. , Li-Jessen NYK. , Kist A. :Efficient and Explainable Deep Neural Networks for Airway Symptom Detection in Support of Wearable Health Technology Advanced Intelligent Systems 2022 )ISSN: 2640-4567 10.1002/aisy.202100284 Grzech D. , Azampour MF. , Glocker B. , Schnabel J. , Navab N. , Kainz B. , Folgoc LL. :A variational Bayesian method for similarity learning in non-rigid image registration 2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2022 (New Orleans, LA 19. June 2022 - 24. June 2022 )In: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition 2022 10.1109/CVPR52688.2022.00022 Hassani RH. , Bannwart M. , Bolliger M. , Seel T. , Brunner R. , Rauter G. :Real-time motion onset recognition for robot-assisted gait rehabilitation Journal of neuroEngineering and rehabilitation 19 2022 ), Article No.: 11 ISSN: 1743-0003 10.1186/s12984-022-00984-x Hassani RH. , Willi R. , Rauter G. , Bolliger M. , Seel T. :Validation of Non-Restrictive Inertial Gait Analysis of Individuals with Incomplete Spinal Cord Injury in Clinical Settings Sensors 22 2022 )ISSN: 1424-8220 10.3390/s22114237 Hecht D. , Pfahler T. , Ullmann I. , Altstidl TR. , Amer N. , Jin Y. , Eskofier B. , Vossiek M. :In Vivo Skin-Type Classification Using Millimeter-Wave Near-Field Probe Spectroscopy 2022 52nd European Microwave Conference (Milan 27. September 2022 - 29. 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2021 2021
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November 2021 )10.1109/EMBC46164.2021.9630653 Ullrich M. , Mücke A. , Küderle A. , Roth N. , Gladow T. , Gaßner H. , Marxreiter F. , Klucken J. , Eskofier B. , Kluge F. :Detection of unsupervised standardized gait tests from real-world inertial sensor data in Parkinson’s disease IEEE Transactions on Neural Systems and Rehabilitation Engineering 2021 ), p. 2103-2111 ISSN: 1534-4320 10.1109/TNSRE.2021.3119390 https://ieeexplore.ieee.org/abstract/document/9567680 Wairagkar M. , Lima MR. , Bazo D. , Craig R. , Weissbart H. , Etoundi AC. , Reichenbach T. , Iyengar P. , Vaswani S. , James C. , Barnaghi P. , Melhuish C. , Vaidyanathan R. :Emotive Response to a Hybrid-Face Robot and Translation to Consumer Social Robots IEEE Internet of Things 2021 )ISSN: 2327-4662 10.1109/JIOT.2021.3097592 Wehbi M. , Hamann T. , Barth J. , Kaempf P. , Zanca D. , Eskofier B. :Towards an IMU-based Pen Online Handwriting Recognizer International Conference on Document Analysis and Recognition ICDAR 2021 (Lausanne 5. September 2021 - 10. September 2021 )10.1007/978-3-030-86334-0_19 Werner R. , Szkitsak J. , Sentker T. , Madesta F. , Schwarz A. , Fernolendt S. , Vornehm M. , Gauer T. , Bert C. , Hofmann C. :Comparison of intelligent 4D CT sequence scanning and conventional spiral 4D CT: A first comprehensive phantom study Physics in Medicine and Biology 66 2021 ), Article No.: 015004 ISSN: 0031-9155 10.1088/1361-6560/abc93a Weygers I. , Kok M. , Seel T. , Shah D. , Taylan O. , Scheys L. , Hallez H. , Claeys K. :In-vitro validation of inertial-sensor-to-bone alignment Journal of Biomechanics 128 2021 ), Article No.: 110781 ISSN: 0021-9290 10.1016/j.jbiomech.2021.110781 Weygers I. , Kok M. , Seel T. , Shah D. , Taylan O. , Scheys L. , Hallez H. , Claeys K. :Reference in-vitro dataset for inertial-sensor-to-bone alignment applied to the tibiofemoral joint Scientific Data 8 2021 ), Article No.: 208 ISSN: 2052-4463 10.1038/s41597-021-00995-8 Wirth M. , Kohl S. , Gradl S. , Farlock R. , Roth D. , Eskofier B. :Assessing visual exploratory activity of athletes in virtual reality using head motion characteristics Sensors 21 2021 ), Article No.: 3728 ISSN: 1424-8220 10.3390/s21113728 Yu K. , Gorbachev G. , Eck U. , Pankratz F. , Navab N. , Roth D. :Avatars for Teleconsultation: Effects of Avatar Embodiment Techniques on User Perception in 3D Asymmetric Telepresence IEEE Transactions on Visualization and Computer Graphics 2021 )ISSN: 1077-2626 10.1109/TVCG.2021.3106480 Zhao N. , Seitinger S. , Richer R. , Paradiso JA. :Real-time Work Environment Optimization using Multimodal Media and Body Sensor Network Smart Health 19 2021 ), p. 100164 ISSN: 2352-6483 10.1016/j.smhl.2020.100164 Zolotareva O. , Nasirigerdeh R. , Matschinske J. , Torkzadehmahani R. , Bakhtiari M. , Frisch T. , Spaeth J. , Blumenthal DB. , Abbasinejad A. , Tieri P. , Kaissis G. , Rueckert D. , Wenke NK. , List M. , Baumbach J. :Flimma: a federated and privacy-aware tool for differential gene expression analysis Genome Biology 22 2021 ), Article No.: 338 ISSN: 1474-760X 10.1186/s13059-021-02553-2 Zrenner M. , Heyde C. , Duemler B. , Dykman S. , Roecker K. , Eskofier B. :Retrospective Analysis of Training and Its Response in Marathon Finishers Based on Fitness App Data Frontiers in Physiology 12 2021 ), Article No.: 669884 ISSN: 1664-042X 10.3389/fphys.2021.669884
2020 2020
Blumenthal DB. , Baumbach J. , Hoffmann M. , Kacprowski T. , List M. :A framework for modeling epistatic interaction Bioinformatics 37 2020 ), p. 1708 - 1716 ISSN: 1367-4803 10.1093/bioinformatics/btaa990 https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaa990/6012351?guestAccessKey=4683fb7f-7afc-4b9c-b0d5-3d0085904eb4 Blumenthal DB. , Boria N. , Gamper J. , Bougleux S. , Brun L. :Comparing heuristics for graph edit distance computation Vldb Journal 29 2020 ), p. 419-458 ISSN: 1066-8888 10.1007/s00778-019-00544-1 Blumenthal DB. , Gamper J. :On the exact computation of the graph edit distance Pattern Recognition Letters 134 2020 ), p. 46-57 ISSN: 0167-8655 10.1016/j.patrec.2018.05.002 Blumenthal DB. , Viola L. , List M. , Baumbach J. , Tieri P. , Kacprowski T. :EpiGEN: An epistasis simulation pipeline Bioinformatics 36 2020 ), p. 4957-4959 ISSN: 1367-4803 10.1093/bioinformatics/btaa245 https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaa245/5820008?guestAccessKey=2385c5f1-6587-4065-b2f2-1039765fa5b6 Boria N. , Blumenthal DB. , Bougleux S. , Brun L. :Improved local search for graph edit distance Pattern Recognition Letters 129 2020 ), p. 19-25 ISSN: 0167-8655 10.1016/j.patrec.2019.10.028 Bougleux S. , Gauzere B. , Blumenthal DB. , Brun L. :Fast linear sum assignment with error-correction and no cost constraints Pattern Recognition Letters 134 2020 ), p. 37-45 ISSN: 0167-8655 10.1016/j.patrec.2018.03.032 Chondrogiannis T. , Bouros P. , Gamper J. , Leser U. , Blumenthal DB. :Finding k-shortest paths with limited overlap Vldb Journal 2020 )ISSN: 1066-8888 10.1007/s00778-020-00604-x Del Vecchio A. , Sylos-Labini F. , Mondi V. , Paolillo P. , Ivanenko Y. , Lacquaniti F. , Farina D. :Spinal motoneurons of the human newborn are highly synchronized during leg movements Science Advances 6 2020 ), p. eabc3916 ISSN: 2375-2548 10.1126/sciadv.abc3916 Feigl T. , Gruner L. , Mutschler C. , Roth D. :Real-Time Gait Reconstruction for Virtual Reality Using a Single Sensor 2020 IEEE International Symposium on Mixed and Augmented Reality, ISMAR-Adjunct 2020 (Ipojuca, Pernambuco 9. November 2020 - 13. November 2020 )In: Adjunct Proceedings of the 2020 IEEE International Symposium on Mixed and Augmented Reality, ISMAR-Adjunct 2020 2020 10.1109/ISMAR-Adjunct51615.2020.00037 Felici F. , Del Vecchio A. :Surface Electromyography: What Limits Its Use in Exercise and Sport Physiology? Frontiers in Neurology 11 2020 ), Article No.: 578504 ISSN: 1664-2295 10.3389/fneur.2020.578504 Gradl S. :The Stroop Room : A Wearable Virtual Reality Stress Laboratory Based on the Electrocardiogram 2020 )https://opus4.kobv.de/opus4-fau/frontdoor/index/index/docId/15434 Helmer S. , Blumenthal DB. , Paschen K. :What is meaningful research and how should we measure it? Scientometrics 125 2020 ), p. 153-169 ISSN: 0138-9130 10.1007/s11192-020-03649-5 Köferl F. , Link J. , Eskofier B. :Application of SORT on Multi-Object Tracking and Segmentation Conference on Computer Vision and Pattern Recognition; (Seattle, WA, USA (Virtual) 19. June 2020 - 19. June 2020 )https://motchallenge.net/workshops/bmtt2020/papers/Application_and_Adaptations_of_SORT_on_MOTS20.pdf Lazareva O. , Canzar S. , Yuan K. , Baumbach J. , Blumenthal DB. , Tieri P. , Kacprowski T. , List M. :BiCoN: Network-constrained biclustering of patients and omics data Bioinformatics 37 2020 ), p. 2398 - 2404 ISSN: 1367-4803 10.1093/bioinformatics/btaa1076 https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaa1076/6050718?guestAccessKey=e2e9cb2b-ac3d-44a6-abc7-2b92ae15d34c Löffler C. , Nickel C. , Sobel C. , Daniel D. , Braat J. , Gruhler B. , Woller P. , Witt N. , Mutschler C. :Automated Quality Assurance for Hand-held Tools via Embedded Classification and AutoML European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD) (Virtual (Ghent, Belgium) 14. September 2020 - 18. September 2020 )https://bitbucket.org/ghentdatascience/ecmlpkdd20-papers/raw/master/Demo/sub_1329.pdf Matschinske J. , Salgado-Albarran M. , Sadegh S. , Bongiovanni D. , Baumbach J. , Blumenthal DB. :Individuating Possibly Repurposable Drugs and Drug Targets for COVID-19 Treatment through Hypothesis-Driven Systems Medicine Using CoVex Assay and Drug Development Technologies 18 2020 ), p. 348-355 ISSN: 1540-658X 10.1089/adt.2020.1010 Mehringer W. , Wirth M. , Gradl S. , Durner L. , Ring M. , Laudanski AF. , Eskofier B. , Michelson G. :An Image-Based Method for Measuring Strabismus in Virtual Reality 2020 IEEE International Symposium on Mixed and Augmented Reality (ISMAR) (Recife 9. November 2020 - 13. November 2020 )In: IEEE (ed.): 2020 IEEE International Symposium on Mixed and Augmented Reality Adjunct (ISMAR-Adjunct) 2020 10.1109/ISMAR-Adjunct51615.2020.00018 Mishra A. , Löffler C. , Plinge A. :Recipes for Post-training Quantization of Deep Neural Networks 6th Workshop on Energy Efficient Machine Learning and Cognitive Computing (EMC^2) (Virtual (from San Jose, California) 5. December 2020 - 5. December 2020 )https://www.emc2-ai.org/assets/docs/virtual-20/emc2-virtual20-paper-8.pdf https://www.emc2-ai.org/assets/docs/virtual-20/emc2-virtual20-paper-8.pdf Rüthlein M. , Köferl F. , Mehringer W. , Eskofier B. :Interactive Segmentation of RGB-D Indoor Scenes using Deep Learning International Conference on Machine Learning; (Virtual Conference 18. July 2020 - 18. July 2020 )Sadegh S. , Matschinske J. , Blumenthal DB. , Galindez G. , Kacprowski T. , List M. , Nasirigerdeh R. , Oubounyt M. , Pichlmair A. , Rose TD. , Salgado-Albarran M. , Spaeth J. , Stukalov A. , Wenke NK. , Yuan K. , Pauling JK. , Baumbach J. :Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing Nature Communications 11 2020 ), Article No.: 3518 ISSN: 2041-1723 10.1038/s41467-020-17189-2 Seifer AK. , Schinkel-Bielefeld N. , Escalante Banuelos A. , Hoppe U. , Maier A. , Schröter H. :Predicting Hearing Aid Fittings Based on Audiometric and Subject-Related Data: A Machine Learning Approach Virtual Conference on Computational Audiology (VCCA2020) (Virtual 19. June 2020 - 19. June 2020 )In: Virtual Conference on Computational Audiology (VCCA2020) 2020 https://computationalaudiology.com/predicting-hearing-aid-fittings-based-on-audiometric-and-subject-related-data-a-machine-learning-approach/ Sidoroff V. , Raccagni C. , Kaindlstorfer C. , Eschlboeck S. , Fanciulli A. , Granata R. , Eskofier B. , Seppi K. , Poewe W. , Willeit J. , Kiechl S. , Mahlknecht P. , Stockner H. , Marini K. , Schorr O. , Rungger G. , Klucken J. , Wenning G. , Gaßner H. :Characterization of gait variability in multiple system atrophy and Parkinson's disease Journal of Neurology 2020 )ISSN: 0340-5354 10.1007/s00415-020-10355-y Skarabot J. , Brownstein CG. , Casolo A. , Del Vecchio A. , Ansdell P. :The knowns and unknowns of neural adaptations to resistance training European Journal of Applied Physiology 2020 )ISSN: 1439-6319 10.1007/s00421-020-04567-3 Stahlke M. , Kram S. , Mutschler C. , Mahr T. :NLOS detection using UWB channel impulse responses and convolutional neural networks International Conference on Localization and GNSS (ICL-GNSS) (Tampere 2. June 2020 - 4. June 2020 )Tietsch M. , Muaremi A. , Clay I. , Kluge F. , Hoefling H. , Ullrich M. , Küderle A. , Eskofier B. , Müller A. :Robust Step Detection from Different Waist-Worn Sensor Positions: Implications for Clinical Studies Digital Biomarkers 4 2020 ), p. 50-58 ISSN: 2504-110X 10.1159/000511611 Wehbi M. , Hamann T. , Barth J. , Eskofier B. :Digitizing Handwriting with a Sensor Pen: A Writer-Independent Recognizer 17th International Conference on Frontiers in Handwriting Recognition (ICFHR) (Dortmund 8. September 2020 - 10. September 2020 )10.1109/ICFHR2020.2020.00061 Werner R. , Sentker T. , Madesta F. , Schwarz A. , Vornehm M. , Gauer T. , Hofmann C. :Intelligent 4D CT sequence scanning (i4DCT): First scanner prototype implementation and phantom measurements of automated breathing signal-guided 4D CT Medical Physics 47 2020 ), p. 2408-2412 ISSN: 0094-2405 10.1002/mp.14106 Wittenberg T. , Koch R. , Pfeiffer N. , Lang N. , Struck M. , Amft O. , Eskofier B. :Evaluation of HRV estimation algorithms from PPG data using neural networks Current Directions in Biomedical Engineering 6 2020 ), Article No.: 20203130 ISSN: 2364-5504 10.1515/cdbme-2020-3130 https://www.degruyter.com/document/doi/10.1515/cdbme-2020-3130/html
2019 2019
Abel L. , Richer R. , Küderle A. , Gradl S. , Eskofier B. , Rohleder N. :Classification of Acute Stress-Induced Response Patterns EAI International Conference on Pervasive Computing Technologies for Healthcare (PervasiveHealth '19) (Trento 20. May 2019 - 23. May 2019 )10.1145/3329189.3329231 https://www.mad.tf.fau.de/files/2019/05/2019-Abel-PervasiveHealth-StressResponsePatterns.pdf Dorschky E. , Nitschke M. , Seifer AK. , van den Bogert AJ. , Eskofier B. :Estimation of Gait Kinematics and Kinetics from Inertial Sensor Data Using Optimal Control of Musculoskeletal Models Journal of Biomechanics 2019 )ISSN: 0021-9290 10.1016/j.jbiomech.2019.07.022 https://www.mad.tf.fau.de/files/2019/08/201908_JBiomech_Dorschky.pdf Kram S. , Stahlke M. , Feigl T. , Seitz J. , Thielecke J. :UWB channel impulse responses for positioning in complex environments: A detailed feature analysis Sensors 2019 )ISSN: 1424-8220
2018 2018
Blumenthal DB. , Bougleux S. , Gamper J. , Brun L. :Ring based approximation of graph edit distance Joint IAPR International Workshops on Structural and Syntactic Pattern Recognition, SSPR 2018 and Statistical Techniques in Pattern Recognition, SPR 2018 (Beijing 17. August 2018 - 19. August 2018 )In: Edwin R. Hancock, Tin Kam Ho, Battista Biggio, Richard C. Wilson, Antonio Robles-Kelly, Xiao Bai (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2018 10.1007/978-3-319-97785-0_28 Blumenthal DB. , Daller E. , Bougleux S. , Brun L. , Gamper J. :Quasimetric Graph Edit Distance as a Compact Quadratic Assignment Problem 24th International Conference on Pattern Recognition, ICPR 2018 (Beijing 20. August 2018 - 24. August 2018 )In: Proceedings - International Conference on Pattern Recognition 2018 10.1109/ICPR.2018.8546055 Blumenthal DB. , Gamper J. :Improved lower bounds for graph edit distance IEEE Transactions on Knowledge and Data Engineering 30 2018 ), p. 503-516 ISSN: 1041-4347 10.1109/TKDE.2017.2772243 Chondrogiannis T. , Bouros P. , Gamper J. , Leser U. , Blumenthal DB. :Finding k-dissimilar paths with minimum collective length 26th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, ACM SIGSPATIAL GIS 2018 (Seattle, WA 6. November 2018 - 9. November 2018 )In: Li Xiong, Roberto Tamassia, Kashani Farnoush Banaei, Ralf Hartmut Guting, Erik Hoel (ed.): GIS: Proceedings of the ACM International Symposium on Advances in Geographic Information Systems 2018 10.1145/3274895.3274903 Lloyd DFA, van Poppel M, Schultz A, Pushparajah K, Simpson J, van Amerom JFP, Kainz B, Kuklisova-Murgasova M, Vigneswaran T, Charakida M, Miller O, Zidere V, Sharland G, Rutherford M, Hajnal J, Razavi R:MOTION CORRECTED FETAL CARDIAC MRI INCREASES DIAGNOSTIC CONFIDENCE IN CLINICALLY CHALLENGING CASES Heart 104 2018 ), p. A11-A11 ISSN: 1355-6037 10.1136/heartjnl-2017-BCCA.31
Nitschke M. , Dorschky E. , Seifer AK. , Schlarb H. , van den Bogert AJ. , Eskofier B. :Optimal Control Simulation of a 2D Biomechanical Model for Sensor-Based Gait Analysis Summer School "Humans in Motion" (Heidelberg 23. September 2018 - 28. September 2018 )https://www.mad.tf.fau.de/files/2018/10/2018_09_18_Nitschke_HumansInMotion.pdf
2017 2017
Blumenthal DB. , Gamper J. :Correcting and speeding-up bounds for non-uniform graph edit distance 33rd IEEE International Conference on Data Engineering, ICDE 2017 (San Diego, CA 19. April 2017 - 22. April 2017 )In: Proceedings - International Conference on Data Engineering 2017 10.1109/ICDE.2017.57 Blumenthal DB. , Gamper J. :Exact computation of graph edit distance for uniform and non-uniform metric edit costs 11th IAPR-TC-15 International Workshop on Graph-Based Representations in Pattern Recognition, GbRPR 2017 (Anacapri, ITA 16. May 2017 - 18. May 2017 )In: Pasquale Foggia, Mario Vento, Cheng-Lin Liu (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2017 10.1007/978-3-319-58961-9_19 Kainz B., Bhatia K., Vercauteren T.:Preface RAMBO 2017 Springer Verlag 2017 ISBN: 9783319675633 https://www.scopus.com/record/display.uri?eid=2-s2.0-85029585297&origin=inward
2008 2008
Kainz B. :Automatic differentiation for GPU-accelerated 2D/3D registration 2008 Kainz B., Grabner M., Rüther M.:Fast marker based C-Arm pose estimation 11th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2008 (New York, NY 10.1007/978-3-540-85990-1_78
Reiter G., Reiter U., Kovacs G., Kainz B., Schmidt K., Maier R., Olschewski H., Rienmueller R.:Magnetic resonance-derived 3-dimensional blood flow patterns in the main pulmonary artery as a marker of pulmonary hypertension and a measure of elevated mean pulmonary arterial pressure. Circulation. Cardiovascular genetics 1 2008 ), p. 23-30 ISSN: 1942-3268 10.1161/CIRCIMAGING.108.780247